Volume 11; Issue 6 Suppleme

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BMC Bioinformatics
Volume 11; Issue 6 Suppleme

BMC Bioinformatics

Volume 11; Issue 6 Suppleme

1

Proceedings of the 2010 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference

Jonathan D Wren, Doris M Kupfer, Edward J Perkins, Susan Bridges, Daniel Berleant

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 210 KB

english, 2010

2

Evaluation of gene expression data generated from expired Affymetrix GeneChip®microarrays using MAQC reference RNA samples

Zhining Wen, Charles Wang, Quan Shi, Ying Huang, Zhenqiang Su, Huixiao Hong, Weida Tong, Leming Shi

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.51 MB

english, 2010

3

Enzyme structure dynamics of xylanase I fromTrichoderma longibrachiatum

Ugur Uzuner, Weibing Shi, Lantao Liu, Sanmin Liu, Susie Y Dai, Joshua S Yuan

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.99 MB

english, 2010

4

Quail Genomics: a knowledgebase for Northern bobwhite

Arun Rawat, Kurt A Gust, Mohamed O Elasri, Edward J Perkins

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.53 MB

english, 2010

5

Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization)

Elina Tjioe, Michael W Berry, Ramin Homayouni

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.20 MB

english, 2010

6

Next generation models for storage and representation of microbial biological annotation

Daniel J Quest, Miriam L Land, Thomas S Brettin, Robert W Cottingham

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 982 KB

english, 2010

7

HPIDB - a unified resource for host-pathogen interactions

Ranjit Kumar, Bindu Nanduri

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 671 KB

english, 2010

8

Promoter prediction inE. colibased on SIDD profiles and Artificial Neural Networks

Charles Bland, Abigail S Newsome, Aleksandra A Markovets

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 313 KB

english, 2010

9

Phylometrics: a pipeline for inferring phylogenetic trees from a sequence relationship network perspective

Samuel A Smits, Cleber C Ouverney

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.56 MB

english, 2010

10

Time lagged information theoretic approaches to the reverse engineering of gene regulatory networks

Vijender Chaitankar, Preetam Ghosh, Edward J Perkins, Ping Gong, Chaoyang Zhang

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.57 MB

english, 2010

11

Applying internal coordinate mechanics to model the interactions between 8R-lipoxygenase and its substrate

Shuju Bai, Tianchuan Du, Ebrahim Khosravi

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 996 KB

english, 2010

12

A framework for automated enrichment of functionally significant inverted repeats in whole genomes

Cyriac Kandoth, Fikret Ercal, Ronald L Frank

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 751 KB

english, 2010

13

A predictive model for secondary RNA structure using graph theory and a neural network

Denise R Koessler, Debra J Knisley, Jeff Knisley, Teresa Haynes

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 675 KB

english, 2010

14

Comparative genome analysis of PHB gene family reveals deep evolutionary origins and diverse gene function

Chao Di, Wenying Xu, Zhen Su, Joshua S Yuan

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 6.03 MB

english, 2010

15

Lesion detection in demoscopy images with novel density-based and active contour approaches

Mutlu Mete, Metodiev Nikolay Sirakov

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 3.39 MB

english, 2010

16

Dynamics of protofibril elongation and association involved in Aβ42 peptide aggregation in Alzheimer’s disease

Preetam Ghosh, Amit Kumar, Bhaswati Datta, Vijayaraghavan Rangachari

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 4.30 MB

english, 2010

17

Integrated database for identifying candidate genes forAspergillus flavusresistance in maize

Rowena Y Kelley, Cathy Gresham, Jonathan Harper, Susan M Bridges, Marilyn L Warburton, Leigh K Hawkins, Olga Pechanova, Bela Peethambaran, Tibor Pechan, Dawn S Luthe, J E Mylroie, Arunkanth Ankala, Se

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.67 MB

english, 2010

18

Analysis of density based and fuzzy c-means clustering methods on lesion border extraction in dermoscopy images

Sinan Kockara, Mutlu Mete, Bernard Chen, Kemal Aydin

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 777 KB

english, 2010

19

Constructing non-stationary Dynamic Bayesian Networks with a flexible lag choosing mechanism

Yi Jia, Jun Huan

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.01 MB

english, 2010

20

IView: introgression library visualization and query tool

Christopher A Bottoms, Sherry Flint-Garcia, Michael D McMullen

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.31 MB

english, 2010

21

GOModeler-A tool for hypothesis-testing of functional genomics datasets

Prashanti Manda, McKinley G Freeman, Susan M Bridges, TJ Jankun-Kelly, Bindu Nanduri, Fiona M McCarthy, Shane C Burgess

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.13 MB

english, 2010

22

Assessing constancy of substitution rates in viruses over evolutionary time

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 469 KB

english, 2010

23

An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays

Hong Fang, Joshua Xu, Don Ding, Scott A Jackson, Isha R Patel, Jonathan G Frye, Wen Zou, Rajesh Nayak, Steven Foley, James Chen, Zhenqiang Su, Yanbin Ye, Steve Turner, Steve Harris, Guangxu Zhou, Carl

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.61 MB

english, 2010

24

The EDKB: an established knowledge base for endocrine disrupting chemicals

Don Ding, Lei Xu, Hong Fang, Huixiao Hong, Roger Perkins, Steve Harris, Edward D Bearden, Leming Shi, Weida Tong

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 681 KB

english, 2010

25

Two new ArrayTrack libraries for personalized biomedical research

Joshua Xu, Carolyn Wise, Vijayalakshmi Varma, Hong Fang, Baitang Ning, Huixiao Hong, Weida Tong, Jim Kaput

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 870 KB

english, 2010

26

PEPPI: a peptidomic database of human protein isoforms for proteomics experiments

Ao Zhou, Fan Zhang, Jake Y Chen

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.15 MB

english, 2010

27

Identification of diagnostic subnetwork markers for cancer in human protein-protein interaction network

Junjie Su, Byung-Jun Yoon, Edward R Dougherty

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.24 MB

english, 2010

28

Analysis of Bovine Viral Diarrhea Viruses-infected monocytes: identification of cytopathic and non-cytopathic biotype differences

Mais Ammari, Fiona M McCarthy, Bindu Nanduri, Lesya M Pinchuk

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 944 KB

english, 2010

29

Mixed reality simulation of rasping procedure in artificial cervical disc replacement (ACDR) surgery

Tansel Halic, Sinan Kockara, Coskun Bayrak, Richard Rowe

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 5.49 MB

english, 2010